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{{{# !/bin/sh [no spaces] [-x /etc/vnc/startup] && exec /etc/vnc/startup [ -r $HOME/.Xresources ] && xrdb $HOME/.Xresources xsetroot -solid grey vncconfig -iconic & x-terminal-emulator -geometry 80x24+10+10 -ls -title "$VNCDESKTOP Desktop" & x-window-manager & gnome-panel & gnome-settings-daemon & metacity & nautilus }}} |
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| sudo adduser [username] sudo usermod -aG sudo [username] |
sudo adduser newusername sudo usermod -aG sudo newusername |
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Install and run Anaconda: {{{ ls /opt/anaconda3 sudo bash [name of anaconda .sh file] pip install theano pip install keras apt-get install git |
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| Home folder: Edit `keras.json` and change `tensorflow` to `theano` Install CUDA 8 and CUDNN: http://askubuntu.com/questions/788323/change-runlevel-on-16-04 http://askubuntu.com/questions/481414/install-nvidia-driver-instead-nouveau (top solution) Add CUDA directory `cuda/bin` to path Copy `cudnn.h` to cuda include directory Copy shared libraries to cuda library Make `.theanorc` in home directory Set CUDA/root environment variable Change ldconfig in cuda lib directory: `sudo ldconfig /usr/local/cuda/lib64` ''(unclear how often we have to do this -- each restart? Per user?)'' == Mount Farnsworth == Only needs to be done once: Will only unmount if we do so explicitly or if Agnew/Farnsworth gets rebooted (or if their network connection dies) Install cifs-utils package: `sudo apt-get install cifs-utils` `sudo mkdir /mnt/eeg_data_analysis` (or whatever the share is named) `sudo mount -t cifs -o username=matt //farnsworth/eeg_data/analysis /mnt/eeg_data_analysis/` (replace username with your Farnsworth username) |
Setup for deep learning workstation
This page covers the steps for setting up a machine primarily intended for deep learning analyses. This is assuming Ubuntu has already been installed.
Initial setup
Package installation
openssh-server sudo apt-get install tightvncserver sudo apt-get install ubuntu-desktop gnome-panel gnome-settings-daemon metacity nautilus gnome-terminal
VNC server configuration
# !/bin/sh [no spaces] [-x /etc/vnc/startup] && exec /etc/vnc/startup [ -r $HOME/.Xresources ] && xrdb $HOME/.Xresources xsetroot -solid grey vncconfig -iconic & x-terminal-emulator -geometry 80x24+10+10 -ls -title "$VNCDESKTOP Desktop" & x-window-manager & gnome-panel & gnome-settings-daemon & metacity & nautilus Adding users
sudo adduser newusername sudo usermod -aG sudo newusername
Keras setup
Install and run Anaconda:
ls /opt/anaconda3 sudo bash [name of anaconda .sh file] pip install theano pip install keras apt-get install git
Home folder: Edit keras.json and change tensorflow to theano
Install CUDA 8 and CUDNN:
http://askubuntu.com/questions/788323/change-runlevel-on-16-04
http://askubuntu.com/questions/481414/install-nvidia-driver-instead-nouveau (top solution)
Add CUDA directory cuda/bin to path
Copy cudnn.h to cuda include directory
Copy shared libraries to cuda library
Make .theanorc in home directory
Set CUDA/root environment variable
Change ldconfig in cuda lib directory: sudo ldconfig /usr/local/cuda/lib64 (unclear how often we have to do this -- each restart? Per user?)
Mount Farnsworth
Only needs to be done once: Will only unmount if we do so explicitly or if Agnew/Farnsworth gets rebooted (or if their network connection dies) Install cifs-utils package: sudo apt-get install cifs-utils sudo mkdir /mnt/eeg_data_analysis (or whatever the share is named) sudo mount -t cifs -o username=matt //farnsworth/eeg_data/analysis /mnt/eeg_data_analysis/ (replace username with your Farnsworth username)